Information for motif5


Reverse Opposite:

p-value:1e-44
log p-value:-1.028e+02
Information Content per bp:1.439
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets93.8 +/- 52.3bp
Average Position of motif in Background126.7 +/- 1.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGGATCTTCAAG
--CGGTTTCAAA

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGGATCTTCAAG-
-GNCTATAAAAGG

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGGATCTTCAAG-------
--NANTTTCAAGTGGTTAN

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGATCTTCAAG--
TAGAANVTTCTAGAA

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGGATCTTCAAG-
-AGGTCTCTAACC

PH0114.1_Nkx2-5/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGGATCTTCAAG-------
---AAATTCAAGTGGNTTN

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------TGGATCTTCAAG--
NNTTCTGGAANNTTCTAGAA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:TGGATCTTCAAG----
------NTCAAGGTCA

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TGGATCTTCAAG
----GCTTCC--

MA0486.1_HSF1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGGATCTTCAAG---
AGAANNTTCTAGAAN