Information for motif6


Reverse Opposite:

p-value:1e-42
log p-value:-9.836e+01
Information Content per bp:1.696
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.1 +/- 53.2bp
Average Position of motif in Background124.8 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAATCCCTT---
NTTGTTAATCCCTCTNN

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAATCCCTT--
NANANTTAATCCCNNNN

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAATCCCTT--
GNNNATTAATCCCTNCN

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTTAAATCCCTT--
GATAATTAATCCCTCTT

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTTAAATCCCTT--
AATCGTTAATCCCTTTA

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAATCCCTT--
GANNATTAATCCCTNNN

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAATCCCTT---
NTAGTTAATCCCCTTAN

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAATCCCTT--
NNNAATTAATCCCCNCN

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTAAATCCCTT---
CNATAATCCGNTTNT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTTAAATCCCTT
---TAATCCCN-