Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 21801)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 15608)	% of Background Sequences with Motif
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-11	-2.760e+01	0.0000	4504.0	20.66%	2931.1	18.78%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-8	-1.975e+01	0.0000	2339.0	10.73%	1490.6	9.55%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.924e+01	0.0000	1448.0	6.64%	892.7	5.72%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-8	-1.861e+01	0.0000	227.0	1.04%	109.4	0.70%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-7	-1.800e+01	0.0000	145.0	0.67%	63.8	0.41%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-7	-1.648e+01	0.0000	1563.0	7.17%	981.4	6.29%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-6	-1.547e+01	0.0000	1704.0	7.82%	1081.4	6.93%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-6	-1.526e+01	0.0000	9747.0	44.72%	6715.6	43.03%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-6	-1.514e+01	0.0000	1368.0	6.28%	856.8	5.49%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-6	-1.464e+01	0.0000	1795.0	8.24%	1147.7	7.35%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.453e+01	0.0000	1346.0	6.18%	844.0	5.41%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-5	-1.336e+01	0.0000	2394.0	10.98%	1564.1	10.02%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-5	-1.228e+01	0.0001	1632.0	7.49%	1049.5	6.72%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-5	-1.202e+01	0.0001	5279.0	24.22%	3584.2	22.96%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.195e+01	0.0001	953.0	4.37%	592.8	3.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-1.047e+01	0.0004	3392.0	15.56%	2277.0	14.59%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-4	-1.043e+01	0.0004	327.0	1.50%	186.7	1.20%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-1.013e+01	0.0005	1733.0	7.95%	1131.5	7.25%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-4	-1.011e+01	0.0005	9511.0	43.63%	6604.5	42.31%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-4	-9.852e+00	0.0006	379.0	1.74%	221.9	1.42%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3	-8.567e+00	0.0022	230.0	1.06%	130.0	0.83%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-8.476e+00	0.0023	161.0	0.74%	86.2	0.55%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-8.317e+00	0.0026	1967.0	9.02%	1305.4	8.36%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-3	-8.277e+00	0.0026	202.0	0.93%	112.1	0.72%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-8.111e+00	0.0030	1361.0	6.24%	889.6	5.70%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-7.988e+00	0.0032	1126.0	5.17%	729.2	4.67%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.869e+00	0.0035	95.0	0.44%	47.5	0.30%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-7.328e+00	0.0058	555.0	2.55%	346.2	2.22%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-7.236e+00	0.0061	493.0	2.26%	305.2	1.96%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-7.216e+00	0.0061	407.0	1.87%	248.6	1.59%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.182e+00	0.0061	2695.0	12.36%	1821.6	11.67%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.104e+00	0.0063	121.0	0.56%	64.6	0.41%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-3	-7.097e+00	0.0063	286.0	1.31%	169.6	1.09%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-6.834e+00	0.0078	2033.0	9.33%	1363.6	8.74%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.821e+00	0.0078	1671.0	7.67%	1112.4	7.13%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.817e+00	0.0078	33.0	0.15%	13.4	0.09%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-6.766e+00	0.0078	1333.0	6.12%	879.4	5.63%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-6.647e+00	0.0084	678.0	3.11%	432.4	2.77%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.400e+00	0.0105	2698.0	12.38%	1831.7	11.74%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.854e+00	0.0176	117.0	0.54%	64.2	0.41%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.745e+00	0.0192	153.0	0.70%	87.2	0.56%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-5.689e+00	0.0198	776.0	3.56%	504.8	3.23%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.572e+00	0.0218	2822.0	12.95%	1927.7	12.35%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.376e+00	0.0259	1574.0	7.22%	1057.3	6.77%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-5.349e+00	0.0260	271.0	1.24%	165.1	1.06%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.322e+00	0.0261	679.0	3.12%	440.2	2.82%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-2	-5.187e+00	0.0292	15.0	0.07%	5.9	0.04%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-2	-5.117e+00	0.0307	138.0	0.63%	80.0	0.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-2	-5.098e+00	0.0307	2022.0	9.28%	1372.6	8.79%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-4.796e+00	0.0406	2551.0	11.70%	1746.5	11.19%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-4.532e+00	0.0519	206.0	0.95%	125.1	0.80%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.376e+00	0.0595	849.0	3.90%	563.3	3.61%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-4.196e+00	0.0699	464.0	2.13%	300.3	1.92%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-4.102e+00	0.0754	5065.0	23.24%	3532.5	22.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.874e+00	0.0929	1338.0	6.14%	907.7	5.82%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.760e+00	0.1022	431.0	1.98%	280.0	1.79%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.612e+00	0.1166	1714.0	7.86%	1173.4	7.52%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.592e+00	0.1168	9.0	0.04%	3.7	0.02%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.427e+00	0.1355	5956.0	27.32%	4178.4	26.77%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.313e+00	0.1493	568.0	2.61%	377.8	2.42%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.276e+00	0.1524	882.0	4.05%	595.3	3.81%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.268e+00	0.1524	3003.0	13.78%	2086.2	13.37%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.246e+00	0.1524	1615.0	7.41%	1108.0	7.10%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.200e+00	0.1567	99.0	0.45%	59.5	0.38%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.152e+00	0.1619	843.0	3.87%	569.8	3.65%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.091e+00	0.1695	743.0	3.41%	500.8	3.21%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.078e+00	0.1695	551.0	2.53%	367.9	2.36%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.074e+00	0.1695	1693.0	7.77%	1165.9	7.47%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.063e+00	0.1695	1361.0	6.24%	932.7	5.98%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.037e+00	0.1695	2063.0	9.46%	1426.9	9.14%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.972e+00	0.1773	101.0	0.46%	61.8	0.40%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.930e+00	0.1825	2048.0	9.40%	1417.8	9.08%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.891e+00	0.1870	3409.0	15.64%	2380.8	15.25%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-1	-2.846e+00	0.1931	1464.0	6.72%	1007.8	6.46%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.690e+00	0.2227	499.0	2.29%	334.0	2.14%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.639e+00	0.2313	471.0	2.16%	315.3	2.02%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.613e+00	0.2342	323.0	1.48%	213.4	1.37%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.590e+00	0.2366	20.0	0.09%	10.5	0.07%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.451e+00	0.2685	2118.0	9.72%	1474.4	9.45%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-1	-2.371e+00	0.2873	524.0	2.40%	354.5	2.27%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.366e+00	0.2873	4704.0	21.58%	3311.9	21.22%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.310e+00	0.2977	615.0	2.82%	418.8	2.68%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.249e+00	0.3128	807.0	3.70%	553.7	3.55%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.210e+00	0.3212	184.0	0.84%	120.1	0.77%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.160e+00	0.3337	854.0	3.92%	587.1	3.76%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.142e+00	0.3359	564.0	2.59%	384.9	2.47%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.110e+00	0.3430	809.0	3.71%	556.4	3.57%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.069e+00	0.3530	490.0	2.25%	333.1	2.13%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.006e+00	0.3719	178.0	0.82%	117.4	0.75%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.975e+00	0.3792	473.0	2.17%	322.7	2.07%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.951e+00	0.3842	547.0	2.51%	374.2	2.40%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.932e+00	0.3873	283.0	1.30%	190.9	1.22%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.861e+00	0.4112	4882.0	22.40%	3451.0	22.11%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.855e+00	0.4112	298.0	1.37%	201.6	1.29%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.835e+00	0.4133	3505.0	16.08%	2471.6	15.84%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.798e+00	0.4245	3.0	0.01%	0.0	0.00%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.759e+00	0.4367	128.0	0.59%	84.5	0.54%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.741e+00	0.4402	541.0	2.48%	372.1	2.38%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.734e+00	0.4402	321.0	1.47%	218.4	1.40%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.705e+00	0.4472	3541.0	16.25%	2500.9	16.02%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.696e+00	0.4472	1222.0	5.61%	853.2	5.47%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.671e+00	0.4535	2283.0	10.47%	1606.5	10.29%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.665e+00	0.4535	618.0	2.84%	427.9	2.74%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.656e+00	0.4535	1454.0	6.67%	1018.7	6.53%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.629e+00	0.4594	1219.0	5.59%	852.8	5.46%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.608e+00	0.4650	661.0	3.03%	458.0	2.93%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.536e+00	0.4948	40.0	0.18%	25.5	0.16%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.524e+00	0.4960	2222.0	10.19%	1566.3	10.04%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.483e+00	0.5125	2267.0	10.40%	1599.4	10.25%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.477e+00	0.5125	75.0	0.34%	49.1	0.31%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.384e+00	0.5554	1007.0	4.62%	706.1	4.52%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.382e+00	0.5554	1455.0	6.68%	1024.2	6.56%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.377e+00	0.5554	168.0	0.77%	114.7	0.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.377e+00	0.5554	168.0	0.77%	114.7	0.73%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.372e+00	0.5554	3480.0	15.97%	2467.0	15.81%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.369e+00	0.5554	1380.0	6.33%	971.5	6.22%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.334e+00	0.5554	2023.0	9.28%	1429.1	9.16%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.228e+00	0.6105	1065.0	4.89%	750.7	4.81%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.139e+00	0.6617	3122.0	14.32%	2218.7	14.21%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.064e+00	0.7073	217.0	1.00%	151.5	0.97%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.055e+00	0.7081	592.0	2.72%	417.9	2.68%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.013e+00	0.7325	910.0	4.17%	644.2	4.13%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.552e-01	0.7694	159.0	0.73%	111.4	0.71%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-9.409e-01	0.7743	3199.0	14.68%	2280.4	14.61%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.399e-01	0.7743	349.0	1.60%	246.8	1.58%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-9.338e-01	0.7743	122.0	0.56%	85.7	0.55%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.283e-01	0.7743	353.0	1.62%	249.1	1.60%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.171e-01	0.7743	1074.0	4.93%	763.6	4.89%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.837e-01	0.7881	1794.0	8.23%	1278.2	8.19%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-8.626e-01	0.7987	124.0	0.57%	87.7	0.56%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.593e-01	0.7987	266.0	1.22%	188.5	1.21%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.376e-01	0.8065	3115.0	14.29%	2225.0	14.26%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-8.159e-01	0.8180	4334.0	19.88%	3097.4	19.84%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.057e-01	0.8202	1003.0	4.60%	715.3	4.58%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.638e-01	0.8490	47.0	0.22%	34.0	0.22%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.612e-01	0.8490	358.0	1.64%	255.1	1.63%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-7.522e-01	0.8490	920.0	4.22%	657.7	4.21%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.479e-01	0.8490	952.0	4.37%	680.4	4.36%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.360e-01	0.8490	163.0	0.75%	116.8	0.75%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.278e-01	0.8490	395.0	1.81%	282.7	1.81%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.271e-01	0.8490	2748.0	12.61%	1966.0	12.60%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-7.140e-01	0.8490	27.0	0.12%	19.6	0.13%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.998e-01	0.8545	1893.0	8.68%	1355.7	8.69%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.872e-01	0.8592	6086.0	27.92%	4358.8	27.93%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.867e-01	0.8592	246.0	1.13%	176.6	1.13%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.741e-01	0.8592	1255.0	5.76%	899.6	5.76%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.625e-01	0.8627	953.0	4.37%	684.0	4.38%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.543e-01	0.8640	389.0	1.78%	279.1	1.79%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.291e-01	0.8801	1592.0	7.30%	1142.1	7.32%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.261e-01	0.8801	1045.0	4.79%	750.3	4.81%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-5.823e-01	0.9101	614.0	2.82%	442.3	2.83%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.727e-01	0.9128	195.0	0.89%	141.6	0.91%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.725e-01	0.9128	359.0	1.65%	259.9	1.67%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.709e-01	0.9128	145.0	0.67%	105.0	0.67%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.683e-01	0.9128	402.0	1.84%	290.9	1.86%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.466e-01	0.9129	6171.0	28.31%	4428.2	28.37%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.360e-01	0.9168	161.0	0.74%	117.2	0.75%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.298e-01	0.9168	882.0	4.05%	636.4	4.08%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.270e-01	0.9168	49.0	0.22%	36.6	0.23%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.235e-01	0.9168	82.0	0.38%	60.0	0.38%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.067e-01	0.9206	906.0	4.16%	654.7	4.19%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.925e-01	0.9280	1171.0	5.37%	845.8	5.42%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-4.799e-01	0.9340	3060.0	14.04%	2202.6	14.11%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.705e-01	0.9370	273.0	1.25%	199.2	1.28%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.595e-01	0.9417	565.0	2.59%	410.9	2.63%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-4.279e-01	0.9661	482.0	2.21%	351.2	2.25%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.277e-01	0.9661	1380.0	6.33%	998.1	6.39%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.163e-01	0.9661	1257.0	5.77%	911.0	5.84%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.089e-01	0.9670	9121.0	41.85%	6553.3	41.99%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.936e-01	0.9763	770.0	3.53%	560.9	3.59%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.645e-01	0.9992	3119.0	14.31%	2252.2	14.43%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.608e-01	0.9992	47.0	0.22%	36.7	0.23%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.447e-01	1.0000	191.0	0.88%	142.5	0.91%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.230e-01	1.0000	639.0	2.93%	468.6	3.00%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.959e-01	1.0000	741.0	3.40%	543.4	3.48%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.908e-01	1.0000	3083.0	14.14%	2232.3	14.30%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.908e-01	1.0000	2862.0	13.13%	2073.3	13.28%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.795e-01	1.0000	219.0	1.00%	164.8	1.06%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.400e-01	1.0000	1472.0	6.75%	1075.7	6.89%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.321e-01	1.0000	1127.0	5.17%	826.4	5.29%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.268e-01	1.0000	574.0	2.63%	425.4	2.73%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.126e-01	1.0000	3853.0	17.68%	2794.1	17.90%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.074e-01	1.0000	3484.0	15.98%	2529.6	16.21%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.022e-01	1.0000	178.0	0.82%	136.3	0.87%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.818e-01	1.0000	98.0	0.45%	77.7	0.50%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.744e-01	1.0000	1339.0	6.14%	984.1	6.30%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.725e-01	1.0000	111.0	0.51%	87.1	0.56%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.649e-01	1.0000	812.0	3.73%	602.5	3.86%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.534e-01	1.0000	455.0	2.09%	342.8	2.20%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.429e-01	1.0000	3741.0	17.16%	2723.7	17.45%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.372e-01	1.0000	4831.0	22.16%	3509.2	22.48%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.288e-01	1.0000	370.0	1.70%	281.0	1.80%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.287e-01	1.0000	1202.0	5.51%	889.5	5.70%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.275e-01	1.0000	71.0	0.33%	58.4	0.37%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.218e-01	1.0000	166.0	0.76%	130.4	0.84%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.214e-01	1.0000	542.0	2.49%	408.0	2.61%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.961e-02	1.0000	1724.0	7.91%	1272.2	8.15%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.082e-02	1.0000	2598.0	11.92%	1907.3	12.22%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-8.996e-02	1.0000	13.0	0.06%	13.3	0.09%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.839e-02	1.0000	2317.0	10.63%	1704.6	10.92%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-8.630e-02	1.0000	1059.0	4.86%	790.7	5.07%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.796e-02	1.0000	765.0	3.51%	576.2	3.69%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.336e-02	1.0000	281.0	1.29%	219.4	1.41%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.072e-02	1.0000	157.0	0.72%	126.4	0.81%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.007e-02	1.0000	294.0	1.35%	229.6	1.47%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.454e-02	1.0000	359.0	1.65%	278.3	1.78%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.447e-02	1.0000	121.0	0.56%	99.6	0.64%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.146e-02	1.0000	473.0	2.17%	363.2	2.33%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.992e-02	1.0000	566.0	2.60%	432.8	2.77%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.333e-02	1.0000	454.0	2.08%	350.1	2.24%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.281e-02	1.0000	1633.0	7.49%	1215.6	7.79%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.278e-02	1.0000	983.0	4.51%	740.6	4.75%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.269e-02	1.0000	466.0	2.14%	359.1	2.30%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.194e-02	1.0000	142.0	0.65%	116.2	0.74%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.742e-02	1.0000	2153.0	9.88%	1595.5	10.22%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.481e-02	1.0000	698.0	3.20%	532.5	3.41%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.278e-02	1.0000	50.0	0.23%	45.8	0.29%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-4.148e-02	1.0000	4284.0	19.65%	3141.6	20.13%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.970e-02	1.0000	2441.0	11.20%	1807.7	11.58%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.711e-02	1.0000	6372.0	29.23%	4649.7	29.79%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.489e-02	1.0000	1037.0	4.76%	785.0	5.03%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.139e-02	1.0000	378.0	1.73%	297.8	1.91%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.075e-02	1.0000	1488.0	6.83%	1116.9	7.16%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.730e-02	1.0000	218.0	1.00%	177.7	1.14%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.390e-02	1.0000	1229.0	5.64%	929.8	5.96%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.117e-02	1.0000	49.0	0.22%	46.5	0.30%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.114e-02	1.0000	16.0	0.07%	18.8	0.12%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.848e-02	1.0000	4529.0	20.78%	3333.6	21.36%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.818e-02	1.0000	460.0	2.11%	362.8	2.32%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.748e-02	1.0000	1997.0	9.16%	1495.1	9.58%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.565e-02	1.0000	8282.0	38.00%	6042.0	38.71%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.469e-02	1.0000	1350.0	6.19%	1023.6	6.56%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.083e-02	1.0000	292.0	1.34%	238.8	1.53%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.072e-02	1.0000	157.0	0.72%	134.0	0.86%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.037e-02	1.0000	1804.0	8.28%	1360.7	8.72%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.002e-02	1.0000	135.0	0.62%	117.7	0.75%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.813e-03	1.0000	1157.0	5.31%	893.7	5.73%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.398e-03	1.0000	363.0	1.67%	298.1	1.91%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.012e-03	1.0000	3848.0	17.65%	2867.7	18.37%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.481e-03	1.0000	982.0	4.51%	770.4	4.94%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-9.200e-04	1.0000	556.0	2.55%	452.7	2.90%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.050e-04	1.0000	975.0	4.47%	769.7	4.93%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.270e-04	1.0000	1916.0	8.79%	1469.3	9.41%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.180e-04	1.0000	2376.0	10.90%	1808.5	11.59%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.360e-04	1.0000	2064.0	9.47%	1581.7	10.13%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-5.000e-06	1.0000	147.0	0.67%	148.3	0.95%