Information for motif50


Reverse Opposite:

p-value:1e-6
log p-value:-1.524e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets97.0 +/- 65.4bp
Average Position of motif in Background119.9 +/- 55.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CCTAGCAA----
TACCATAGCAACGGT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CCTAGCAA---
SCCTAGCAACAG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CCTAGCAA----
CCGCATAGCAACGGA

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.82
Offset:-7
Orientation:forward strand
Alignment:-------CCTAGCAA--------
TGTGACCCTTAGCAACCGATTAA

MA0510.1_RFX5/Jaspar

Match Rank:5
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CCTAGCAA----
CTCCCTGGCAACAGC

MA0509.1_Rfx1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCTAGCAA-
GTTGCCATGGCAAC

MA0600.1_RFX2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCTAGCAA------
GTTGCCATGGCAACCGCGG

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTAGCAA
CTTGGCAA

MA0463.1_Bcl6/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCTAGCAA---
TTTCCTAGAAAGCA

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CCTAGCAA--
NNNATTCCTCGAAAGN