Information for motif28


Reverse Opposite:

p-value:1e-24
log p-value:-5.551e+01
Information Content per bp:1.725
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets101.4 +/- 40.0bp
Average Position of motif in Background94.0 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTACAATGGATT
-RACAAWGG---

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTACAATGGATT
-AACAAAGG---

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTACAATGGATT-
---TAATTGATTA

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTACAATGGATT
--ACAAAG----

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTACAATGGATT-
AATGAACAATGGAATT

MA0077.1_SOX9/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTACAATGGATT
GAACAATGG---

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTACAATGGATT
GAACAATGGN--

MA0078.1_Sox17/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTACAATGGATT
-GACAATGNN--

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTACAATGGATT
RNAACAATGG---

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTACAATGGATT-
TNNAGAACAATANATNN