Information for motif38


Reverse Opposite:

p-value:1e-10
log p-value:-2.353e+01
Information Content per bp:1.764
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets87.0 +/- 63.5bp
Average Position of motif in Background138.5 +/- 53.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0002.1_Arid5a_1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TAATATCGTCGT-
CTAATATTGCTAAA

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------TAATATCGTCGT
NNNTTTNTAATACNG----

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TAATATCGTCGT
CTAATT-------

MA0075.1_Prrx2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TAATATCGTCGT
TAATT-------

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TAATATCGTCGT
AAGATATCCTT--

PH0071.1_Hoxc6/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TAATATCGTCGT
NNTNATTAATTAATTTG-

PH0054.1_Hoxa7_1/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TAATATCGTCGT
GNNNATTAATTAANNCG-

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------TAATATCGTCGT
AGTAATTAATTACTTC--

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TAATATCGTCGT
TCNNTTTACAGCGNNNT

PH0044.1_Homez/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TAATATCGTCGT----
AAAACATCGTTTTTAAG