Information for motif3


Reverse Opposite:

p-value:1e-37
log p-value:-8.674e+01
Information Content per bp:1.506
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets102.4 +/- 57.0bp
Average Position of motif in Background53.7 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ACACCACTAGGA-------
---CTACTAGGATGTNNTN

MA0027.1_En1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACACCACTAGGA
GANCACTACTT---

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----ACACCACTAGGA-
CATAAGACCACCATTAC

MA0511.1_RUNX2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ACACCACTAGGA--
CAAACCACAAACCCC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACACCACTAGGA
NWAACCACADNN-

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACACCACTAGGA
NAAACCACAG---

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACACCACTAGGA----
ATAACCACTTGAAAATT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACACCACTAGGA
AAACCACANN--

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACACCACTAGGA
AAACCACAGC--

MA0130.1_ZNF354C/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:ACACCACTAGGA
-ATCCAC-----