Information for motif42


Reverse Opposite:

p-value:1e-13
log p-value:-3.222e+01
Information Content per bp:1.702
Number of Target Sequences with motif136.0
Percentage of Target Sequences with motif7.01%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif3.57%
Average Position of motif in Targets100.1 +/- 56.6bp
Average Position of motif in Background34.3 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TGCAGACCACAG
--NAAACCACAG

MA0002.2_RUNX1/Jaspar

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:TGCAGACCACAG--
---AAACCACAGAN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TGCAGACCACAG--
--NWAACCACADNN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:TGCAGACCACAG-
---AAACCACAGC

MA0511.1_RUNX2/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TGCAGACCACAG-----
--CAAACCACAAACCCC

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TGCAGACCACAG-
---AAACCACANN

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TGCAGACCACAG-
-------CACAGN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCAGACCACAG----
CATAAGACCACCATTAC

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGCAGACCACAG
-BCAGACWA---

MA0479.1_FOXH1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCAGACCACAG
TCCAATCCACA-