Information for motif27


Reverse Opposite:

p-value:1e-83
log p-value:-1.929e+02
Information Content per bp:1.530
Number of Target Sequences with motif222.0
Percentage of Target Sequences with motif11.44%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif2.96%
Average Position of motif in Targets101.5 +/- 55.8bp
Average Position of motif in Background89.3 +/- 41.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATAACCCT
AAGATATCCTT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ATAACCCT-
-TAATCCCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATAACCCT
GCTAATCC-

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATAACCCT-----
NNNATTAATCCGNTTNA

PH0126.1_Obox6/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATAACCCT-----
CNATAATCCGNTTNT

MA0467.1_Crx/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATAACCCT---
CTAATCCTCTT

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATAACCCT-----
NNTAATCCNGNCNN

PB0059.1_Six6_1/Jaspar

Match Rank:8
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------ATAACCCT--
ANANNTGATACCCNATN

PB0046.1_Mybl1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ATAACCCT------
TTGAAAACCGTTAATTT

MA0111.1_Spz1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATAACCCT
GCTGTTACCCT