Information for motif3


Reverse Opposite:

p-value:1e-45
log p-value:-1.040e+02
Information Content per bp:1.662
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets109.7 +/- 56.8bp
Average Position of motif in Background134.2 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------AGTACTTCTC-
NATTTAAGTACTTANNA

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AGTACTTCTC--
TTCNAAGTACTTNNNNN

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AGTACTTCTC-
NATTTAAGTACTTNAAA

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGTACTTCTC-
CTTTAAGTACTTAATG

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGTACTTCTC
---GCTTCC-

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGTACTTCTC
TTAAGTGCTT---

PB0058.1_Sfpi1_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGTACTTCTC-----
-NNACTTCCTCTTNN

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGTACTTCTC------
-NNAATTCTCGNTNAN

MA0027.1_En1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGTACTTCTC
AAGTAGTGCCC

MA0032.1_FOXC1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGTACTTCTC
GGTAAGTA------