Information for motif19


Reverse Opposite:

p-value:1e-28
log p-value:-6.625e+01
Information Content per bp:1.757
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif2.90%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets108.8 +/- 57.7bp
Average Position of motif in Background90.8 +/- 44.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0595.1_SREBF1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TGRTGTGAGKGA
GTGGGGTGAT---

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TGRTGTGAGKGA
ATGGGGTGAT---

MA0596.1_SREBF2/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGRTGTGAGKGA
ATGGGGTGAT---

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TGRTGTGAGKGA
GTGGCGTGACNG-

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------TGRTGTGAGKGA
NNNNNATTGATGNGTGN--

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TGRTGTGAGKGA
TNTCCTGCTGTGNNG--

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGRTGTGAGKGA----
TGCGGAGTGGGACTGG

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGRTGTGAGKGA
GTNTTGTTGTGANNT-

MA0073.1_RREB1/Jaspar

Match Rank:9
Score:0.54
Offset:-10
Orientation:reverse strand
Alignment:----------TGRTGTGAGKGA
NGGGGGGGGGTGGTTTGGGG--

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGRTGTGAGKGA
TGACGT------