Information for motif34


Reverse Opposite:

p-value:1e-19
log p-value:-4.434e+01
Information Content per bp:1.518
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets112.0 +/- 47.5bp
Average Position of motif in Background56.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTAACACAVG-
AAAAATAACAAACGG

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTAACACAVG
AAAACAAAGG

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTAACACAVG----
AGAAGAACAAAGGACTA

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTAACACAVG----
ATAAGAACAAAGGACTA

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTAACACAVG-
NWAACCACADNN

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTAACACAVG---
AGCGGCACACACGCAA

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTAACACAVG
AAACCACAGC

MA0058.2_MAX/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTAACACAVG-
-AAGCACATGG

MA0002.2_RUNX1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTAACACAVG-
AAACCACAGAN

POL007.1_BREd/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTAACACAVG
--NANANAC-