Information for motif12


Reverse Opposite:

p-value:1e-134
log p-value:-3.102e+02
Information Content per bp:1.530
Number of Target Sequences with motif215.0
Percentage of Target Sequences with motif11.08%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif1.87%
Average Position of motif in Targets105.7 +/- 55.4bp
Average Position of motif in Background102.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TACTGACC-
---TGACCT

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TACTGACC--
NNACTTACCTN

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TACTGACC
TACTNNNN

MA0071.1_RORA_1/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TACTGACC-----
---TGACCTTGAT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TACTGACC-------
NNNNTGACCCGGCGCG

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TACTGACC----
--CTGACCTTTG

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TACTGACC--
TGCTGACTCA

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TACTGACC---
NNAATTAATGACCNNN

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TACTGACC-
GGTTAGAGACCT

MA0124.1_NKX3-1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TACTGACC
ATACTTA--