Information for motif13


Reverse Opposite:

p-value:1e-131
log p-value:-3.020e+02
Information Content per bp:1.530
Number of Target Sequences with motif337.0
Percentage of Target Sequences with motif17.37%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif4.06%
Average Position of motif in Targets100.0 +/- 53.5bp
Average Position of motif in Background133.1 +/- 45.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GATATTAAAT
---ATTAAA-

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GATATTAAAT---
TAGAGGGATTAAATTTC

PH0172.1_Tlx2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GATATTAAAT-----
AANTTATTAATTAATTA

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GATATTAAAT
NGCAATTAAA-

PH0056.1_Hoxa9/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GATATTAAAT----
ACGGCCATAAAATTAAT

PB0148.1_Mtf1_2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GATATTAAAT---
AAATAAGAAAAAAC

PH0125.1_Obox5_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GATATTAAAT---
NANAGGGATTAATTATN

MA0135.1_Lhx3/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GATATTAAAT--
GATTAATTAATTT

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GATATTAAAT-----
NNNTATTGAATTGNNN

PB0105.1_Arid3a_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GATATTAAAT--
ACCCGTATCAAATTT