Information for motif25


Reverse Opposite:

p-value:1e-84
log p-value:-1.955e+02
Information Content per bp:1.914
Number of Target Sequences with motif273.0
Percentage of Target Sequences with motif14.07%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif3.54%
Average Position of motif in Targets98.2 +/- 56.2bp
Average Position of motif in Background106.8 +/- 43.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0479.1_FOXH1/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---AATCCACAAT
TCCAATCCACA--

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--AATCCACAAT
SSAATCCACANN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AATCCACAAT
AAACCACANN

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AATCCACAAT
-ATCCAC---

MA0002.2_RUNX1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AATCCACAAT-
AAACCACAGAN

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AATCCACAAT---
----GACAATGNN

MA0511.1_RUNX2/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AATCCACAAT----
CAAACCACAAACCCC

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AATCCACAAT
NAAACCACAG-

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AATCCACAAT-
NWAACCACADNN

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATCCACAAT-----
TCACGGAACAATAGGTG