Information for motif26


Reverse Opposite:

p-value:1e-84
log p-value:-1.950e+02
Information Content per bp:1.530
Number of Target Sequences with motif317.0
Percentage of Target Sequences with motif16.34%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif5.40%
Average Position of motif in Targets100.5 +/- 55.2bp
Average Position of motif in Background125.7 +/- 57.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGCCAAATAT
TGCCAA----

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAATAT
TTGCCAAG---

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGCCAAATAT--
--CCATATATGG

PB0078.1_Srf_1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGCCAAATAT----
TNCCATATATGGNA

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCCAAATAT--
TNCCATATATGG

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGCCAAATAT-------
---CTAATATTGCTAAA

MA0083.2_SRF/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGCCAAATAT-----
CATGCCCAAATAAGGCAA

PB0145.1_Mafb_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGCCAAATAT-
CAATTGCAAAAATAT

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TGCCAAATAT-
GGGTGTGCCCAAAAGG

MA0052.2_MEF2A/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGCCAAATAT-----
AGCTAAAAATAGCAT