Information for motif3


Reverse Opposite:

p-value:1e-206
log p-value:-4.764e+02
Information Content per bp:1.739
Number of Target Sequences with motif427.0
Percentage of Target Sequences with motif22.01%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif3.97%
Average Position of motif in Targets98.4 +/- 55.9bp
Average Position of motif in Background103.0 +/- 37.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TCYTTCTG-----
TNTCCTGCTGTGNNG

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCYTTCTG-----
NNTCCTGCTGTGNNN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCYTTCTG--
CCCCCTGCTGTG

MA0461.1_Atoh1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TCYTTCTG
GCCATCTG

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCYTTCTG-----
TCNCCTGCTGNGNNN

MA0598.1_EHF/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCYTTCTG
CCTTCCTG

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCYTTCTG--
RCCATMTGTT

MA0474.1_Erg/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCYTTCTG-
CCACTTCCTGT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCYTTCTG--
GCCATCTGTT

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCYTTCTG-
CACTTCCTGT