Information for motif30


Reverse Opposite:

p-value:1e-76
log p-value:-1.760e+02
Information Content per bp:1.733
Number of Target Sequences with motif212.0
Percentage of Target Sequences with motif10.93%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif3.12%
Average Position of motif in Targets90.8 +/- 55.9bp
Average Position of motif in Background61.3 +/- 43.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----GTTTRTGC----
NNGCGTGTGTGCNGCN

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GTTTRTGC----
NNNNTTGTGTGCTTNN

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTTTRTGC-----
ANATTTTTGCAANTN

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTTTRTGC
TGTTTATTT

MA0042.1_FOXI1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTTTRTGC
GGATGTTTGTTT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTTTRTGC-
NTTTTATGAC

MA0040.1_Foxq1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTTTRTGC
TATTGTTTATT-

MA0465.1_CDX2/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTRTGC---
TTTTATGGCTN

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTTTRTGC----
CCATTGTATGCAAAT

PB0104.1_Zscan4_1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTTTRTGC-------
NTNTATGTGCACATNNN