Information for motif34


Reverse Opposite:

p-value:1e-48
log p-value:-1.115e+02
Information Content per bp:1.530
Number of Target Sequences with motif252.0
Percentage of Target Sequences with motif12.99%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif4.52%
Average Position of motif in Targets99.5 +/- 53.6bp
Average Position of motif in Background143.6 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0072.1_RORA_2/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AAGTAGGT---
TATAAGTAGGTCAA

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AAGTAGGT
GGTAAGTA---

MA0124.1_NKX3-1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAGTAGGT
TAAGTAT--

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AAGTAGGT--
AATNTTAAGTGGNTNN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AAGTAGGT---
NTNNTTAAGTGGNTNAN

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGTAGGT
TTAAGTGGA-

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAGTAGGT--
CAGGTAAGTAT

PH0171.1_Nkx2-1/Jaspar

Match Rank:8
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AAGTAGGT--
AANTTCAAGTGGCTTN

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AAGTAGGT--
AATTTCAAGTGGCTTN

PB0155.1_Osr2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AAGTAGGT---
NNTGTAGGTAGCANNT