Information for motif35


Reverse Opposite:

p-value:1e-48
log p-value:-1.114e+02
Information Content per bp:1.530
Number of Target Sequences with motif213.0
Percentage of Target Sequences with motif10.98%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif4.04%
Average Position of motif in Targets93.3 +/- 57.0bp
Average Position of motif in Background122.4 +/- 39.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0002.1_Arid5a_1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TAGTATTA-
NNTNNCAATATTAG

PB0129.1_Glis2_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TAGTATTA----
AATATTAATAAAGA

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TAGTATTA
NGGGATTA

PB0106.1_Arid5a_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TAGTATTA----
TNNTTTCGTATTNNANN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TAGTATTA--
--GGATTAGC

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TAGTATTA-----
TGAACCGGATTAATGAA

MA0132.1_Pdx1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TAGTATTA-
---AATTAG

PB0187.1_Tcf7_2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TAGTATTA-------
CCGTATTATAAACAA

MA0124.1_NKX3-1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TAGTATTA
TAAGTAT--

MA0075.1_Prrx2/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TAGTATTA
---AATTA