Information for motif36


Reverse Opposite:

p-value:1e-39
log p-value:-9.063e+01
Information Content per bp:1.707
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif5.57%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif1.46%
Average Position of motif in Targets97.6 +/- 53.8bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0465.1_CDX2/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGAAGCAAGAAA-
--AAGCCATAAAA

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGAAGCAAGAAA
NGAAGC------

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGAAGCAAGAAA-----
-AGAGCCATAAAATTCG

PB0093.1_Zfp105_1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGAAGCAAGAAA--
AACAAACAACAAGAG

PH0042.1_Hmx2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGAAGCAAGAAA-----
ACAAGCAATTAAAGAAT

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAAGCAAGAAA-----
ACAAGCAATTAAAGAAT

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAAGCAAGAAA-----
ACAAGCAATTAATGAAT

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAAGCAAGAAA----
AAAGGTAATAAAATTT

MA0149.1_EWSR1-FLI1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAAGCAAGAAA------
GGAAGGAAGGAAGGAAGG

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGAAGCAAGAAA--
----GTCATAAAAN