Information for motif40


Reverse Opposite:

p-value:1e-16
log p-value:-3.858e+01
Information Content per bp:1.699
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif5.67%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif2.79%
Average Position of motif in Targets100.3 +/- 56.8bp
Average Position of motif in Background79.7 +/- 0.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0041.1_Foxd3/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTGTTGCTTTT
GAATGTTTGTTT-

MA0133.1_BRCA1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTGTTGCTTTT
-GTGTTGN----

PB0122.1_Foxk1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGTGTTGCTTTT--
NNNTGTTGTTGTTNG

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGTGTTGCTTTT
RSTTTCRSTTTC

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTGTTGCTTTT-
NTNTTGTTGTTTGTN

PB0037.1_Isgf3g_1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTGTTGCTTTT-
TNAGTTTCGATTTTN

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGTGTTGCTTTT-
NNGTANTGTTTTNC

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGTGTTGCTTTT
AGTTTCAGTTTC

PB0123.1_Foxl1_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGTGTTGCTTTT----
NNTTTTGTTTTGATNT

Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:10
Score:0.53
Offset:-9
Orientation:forward strand
Alignment:---------AGTGTTGCTTTT
ACTYKNATTCGTGNTACTTC-