Information for motif47


Reverse Opposite:

p-value:1e-5
log p-value:-1.288e+01
Information Content per bp:1.726
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif5.46%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif3.38%
Average Position of motif in Targets91.5 +/- 51.7bp
Average Position of motif in Background103.2 +/- 47.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0169.1_Sox15_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AATAACATTTCA
TTGAATGAAATTCGA

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AATAACATTTCA
AATGCAATAAAATTTAT

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AATAACATTTCA
CTACCAATAAAATTCT-

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AATAACATTTCA
AACCCAATAAAATTCG-

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AATAACATTTCA
AAAGGTAATAAAATTT--

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AATAACATTTCA
TAGGTAATAAAATTCA-

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AATAACATTTCA--
----GCATTCCAGN

PB0122.1_Foxk1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AATAACATTTCA
CAAACAACAACACCT--

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATAACATTTCA
YTAATYNRATTA--

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATAACATTTCA
GTCATAAAAN----