Information for motif5


Reverse Opposite:

p-value:1e-166
log p-value:-3.841e+02
Information Content per bp:1.530
Number of Target Sequences with motif245.0
Percentage of Target Sequences with motif12.63%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets98.1 +/- 55.7bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTGCC--
NNACTTGCCTT

MA0509.1_Rfx1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AAGTTGCC--------
--GTTGCCATGGNAAC

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAGTTGCC----
CTGTTGCTAGGS

MA0510.1_RFX5/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTGCC------
NCTGTTGCCAGGGAG

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGTTGCC
TTAAGTGGA-

MA0597.1_THAP1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAGTTGCC----
---CTGCCCGCA

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAGTTGCC---
---TTGCCAAG

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AAGTTGCC---
NTNNTTAAGTGGNTNAN

MA0600.1_RFX2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AAGTTGCC--------
NNNCNGTTGCCATGGNAAC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGTTGCC-------
-NGTTGCCATGGCAA