Information for motif9


Reverse Opposite:

p-value:1e-150
log p-value:-3.472e+02
Information Content per bp:1.530
Number of Target Sequences with motif303.0
Percentage of Target Sequences with motif15.62%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif2.48%
Average Position of motif in Targets90.2 +/- 55.8bp
Average Position of motif in Background110.8 +/- 41.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACCAT
TACCATAGCAACGGT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACCAT
CCGCATAGCAACGGA

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.62
Offset:-9
Orientation:forward strand
Alignment:---------GAGCAACCAT----
TGTGACCCTTAGCAACCGATTAA

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAACCAT-
GGACCACCCACG

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAGCAACCAT----
AAGGCGAAATCATCGCA

MA0087.1_Sox5/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGCAACCAT
---NAACAAT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAGCAACCAT
SCCTAGCAACAG-

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GAGCAACCAT-
NNNVCTGWGYAAACASN

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGCAACCAT------
AATGAACAATGGAATT

MA0095.2_YY1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGCAACCAT----
--GCNGCCATCTTG