Information for motif12


Reverse Opposite:

p-value:1e-6
log p-value:-1.547e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets164.0 +/- 21.1bp
Average Position of motif in Background115.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGGGGATA
TGGGGA--

MA0057.1_MZF1_5-13/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGGGGATA
GGAGGGGGAA

PB0128.1_Gcm1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------AGGGGATA--
TGCGCATAGGGGAGGAG

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGGGGATA-----
TATTATGGGATGGATAA

PB0156.1_Plagl1_2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGGGGATA------
GCTGGGGGGTACCCCTT

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGGGATA------
TTAAGGGGATTAACTAC

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGGGATA--
AGGTGTTAAT

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGGGATA--
AAGAGGATTAG

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGGGGATA-----
GGCGAGGGGTCAAGGGC

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGGGATA-----
CGTTGGGGATTAGCCT