Information for motif17


Reverse Opposite:

p-value:1e-5
log p-value:-1.295e+01
Information Content per bp:1.915
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif10.99%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif1.64%
Average Position of motif in Targets92.0 +/- 51.7bp
Average Position of motif in Background104.2 +/- 53.4bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GATCCAAA
CGGTTTCAAA

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATCCAAA-
TTATGCAAAT

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GATCCAAA-
ATATGCAAAT

MA0507.1_POU2F2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GATCCAAA----
ATATGCAAATNNN

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GATCCAAA-----
TTGTATGCAAATTAGA

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GATCCAAA-----
TTGTATGCAAATTAGA

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATCCAAA-
DGATCRATAN

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GATCCAAA
-TGCCAA-

MA0130.1_ZNF354C/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GATCCAAA
-ATCCAC-

MA0479.1_FOXH1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GATCCAAA
TCCAATCCACA