Information for motif4


Reverse Opposite:

p-value:1e-9
log p-value:-2.252e+01
Information Content per bp:1.834
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets79.7 +/- 54.9bp
Average Position of motif in Background112.4 +/- 73.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0505.1_Nr5a2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGAGCTGGTDCT-
GCTGACCTTGAACTN

MA0141.2_Esrrb/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGGTDCT
TGACCTTGANNN

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGGTDCT
TGACCTTGACCT

MA0071.1_RORA_1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGGTDCT
TGACCTTGAT--

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGAGCTGGTDCT
--NGCTN-----

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGGTDCT
TGACCTTGAV--

MA0592.1_ESRRA/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGAGCTGGTDCT
NGTGACCTTGG---

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGAGCTGGTDCT
NTGACCTTGA---

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGAGCTGGTDCT
TGACCTTGAN--

MA0160.1_NR4A2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGAGCTGGTDCT
GTGACCTT-----