Information for motif6


Reverse Opposite:

p-value:1e-9
log p-value:-2.095e+01
Information Content per bp:1.788
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif6.59%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets79.7 +/- 65.3bp
Average Position of motif in Background80.4 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTGTGGTGTTGA---
NNNTGTTGTTGTTNG

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTGTGGTGTTGA---
GCGGAGGTGTCGCCTC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGGTGTTGA
NNHTGTGGTTWN--

MA0133.1_BRCA1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GTGTGGTGTTGA
-----GTGTTGN

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GTGTGGTGTTGA-----
--GTNTTGTTGTGANNT

MA0511.1_RUNX2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GTGTGGTGTTGA
GGGGTTTGTGGTTTG--

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GTGTGGTGTTGA
NNGCGTGTGTGCNGCN--

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTGTGGTGTTGA
GCTGTGGTTT---

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GTGTGGTGTTGA----
----GGTGYTGACAGS

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTGTGGTGTTGA
CTGTGGTTTN--