Information for motif8


Reverse Opposite:

p-value:1e-8
log p-value:-2.017e+01
Information Content per bp:1.768
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets133.6 +/- 40.0bp
Average Position of motif in Background34.4 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAAGAAWTTCTT-----
GGAAAAATTGTTAGGAA

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------AAAGAAWTTCTT
AAACAGACAAAGGAAT----

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AAAGAAWTTCTT
-AAGATATCCTT

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AAAGAAWTTCTT-----
-AANTTATTGTTCTNNA

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------AAAGAAWTTCTT
TACTGGAAAAAAAA----

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AAAGAAWTTCTT
AGAAACGAAAGT---

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AAAGAAWTTCTT-----
---AAAATTGTTATGAA

PB0136.1_IRC900814_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AAAGAAWTTCTT----
ATGGAAAGTCGTAAAA

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.50
Offset:-7
Orientation:forward strand
Alignment:-------AAAGAAWTTCTT
AAAAAGTAAACAAACAC--

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AAAGAAWTTCTT
------ATTGTT