Information for motif9


Reverse Opposite:

p-value:1e-8
log p-value:-2.000e+01
Information Content per bp:1.678
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif8.79%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets114.0 +/- 50.3bp
Average Position of motif in Background96.0 +/- 57.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0158.1_HOXA5/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACTARTGGTCA
CACTAATT----

MA0494.1_Nr1h3::Rxra/Jaspar

Match Rank:2
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------CACTARTGGTCA
NNGAGGTTACTNNAGGTCA

LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CACTARTGGTCA
GGGTTACTANAGGTCA

MA0122.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACTARTGGTCA
NCCACTTAN-----

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACTARTGGTCA----
NNANTGGTGGTCTTNNN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACTARTGGTCA----
TCTCAAAGGTCACGAG

PH0017.1_Cux1_2/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CACTARTGGTCA------
---TAGTGATCATCATTA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CACTARTGGTCA
RSCACTYRAG----

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACTARTGGTCA-----
GGCGAGGGGTCAAGGGC

MA0132.1_Pdx1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CACTARTGGTCA
--CTAATT----