Information for motif1


Reverse Opposite:

p-value:1e-57
log p-value:-1.324e+02
Information Content per bp:1.757
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets102.7 +/- 51.2bp
Average Position of motif in Background130.5 +/- 38.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCATTGATAT
CCATTGTTC-

MA0515.1_Sox6/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCATTGATAT
CCATTGTTTT

MA0087.1_Sox5/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCATTGATAT
--ATTGTTA-

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCATTGATAT
CTCATTGTC--

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CCATTGATAT--
ANNTCCATTGTTCNNN

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCATTGATAT----
TTCAATTGTTCTAAAA

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CCATTGATAT-
--ATTGTTTAN

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCATTGATAT
CCWTTGTY--

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCATTGATAT
NCCATTGTTC-

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CCATTGATAT--
NNANTGATTGATNNNN