Information for motif12


Reverse Opposite:

p-value:1e-34
log p-value:-8.037e+01
Information Content per bp:1.740
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets103.3 +/- 59.8bp
Average Position of motif in Background88.6 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTCTTGGTAGGT--
---CAGGTAAGTAT

PH0104.1_Meis2/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTCTTGGTAGGT----
NTATTGACAGGTNNTN

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTCTTGGTAGGT----
GGATTGACAGGTCNTT

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GTCTTGGTAGGT----
NTATTGACAGCTNNTT

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTCTTGGTAGGT--
--CGTGGGTGGTCC

MA0442.1_SOX10/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTCTTGGTAGGT
--CTTTGT----

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GTCTTGGTAGGT----
GTATTGACAGGTNNTT

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GTCTTGGTAGGT
---TTGGCA---

MA0133.1_BRCA1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GTCTTGGTAGGT
GTGTTGN-----

POL007.1_BREd/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GTCTTGGTAGGT-
------GTTTGTT