Information for motif13


Reverse Opposite:

p-value:1e-34
log p-value:-7.859e+01
Information Content per bp:1.712
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets97.0 +/- 56.2bp
Average Position of motif in Background82.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGWAAAT
TNNGGGCAG-----

PB0012.1_Elf3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GGCAGWAAAT
AACAAGGAAGTAA--

PB0011.1_Ehf_1/Jaspar

Match Rank:3
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------GGCAGWAAAT
AGGACCCGGAAGTAA--

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GGCAGWAAAT
AVCAGGAAGT----

PB0058.1_Sfpi1_1/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GGCAGWAAAT
TTAAGAGGAAGTTA--

MA0136.1_ELF5/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGWAAAT
AAGGAAGTA---

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGWAAAT
CTTGGCAA-----

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGCAGWAAAT
NACCGGAAGT----

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCAGWAAAT
NGAAGC----

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGCAGWAAAT
ANCCGGAAGT----