Information for motif16


Reverse Opposite:

p-value:1e-30
log p-value:-7.069e+01
Information Content per bp:1.724
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets101.1 +/- 58.2bp
Average Position of motif in Background72.6 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TACATCCAGCAT
GYCATCMATCAT

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TACATCCAGCAT
-ACATCCTGNT-

MA0070.1_PBX1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TACATCCAGCAT-
-CCATCAATCAAA

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TACATCCAGCAT----
TCGTACCCGCATCATT

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TACATCCAGCAT
------CAGCC-

MA0136.1_ELF5/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TACATCCAGCAT
TACTTCCTT---

MA0130.1_ZNF354C/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TACATCCAGCAT
---ATCCAC---

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TACATCCAGCAT----
-CCACACAGCAGGAGA

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TACATCCAGCAT------
-TCACCCATCAATAAACA

MA0496.1_MAFK/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TACATCCAGCAT---
CTGAGTCAGCAATTT