Information for motif17


Reverse Opposite:

p-value:1e-29
log p-value:-6.863e+01
Information Content per bp:1.511
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets98.4 +/- 53.7bp
Average Position of motif in Background106.1 +/- 6.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CTTCATTKKA---
NANTTCATTGAATTA

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTTCATTKKA---
NNCATTCATTCATNNN

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTTCATTKKA--
ACATTCATGACACG

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTTCATTKKA--
NNANTTTTATTGGNNN

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTTCATTKKA-
AATCAATTCAATAATT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTCATTKKA
TTTTATTRGN

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTTCATTKKA--
NNAATTTTATTGGNTN

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CTTCATTKKA--
NTNAATTTTATTGNATT

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CTTCATTKKA-
GACCACATTCATACAAT

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTCATTKKA-
ANTTCTNNAGAA