Information for motif2


Reverse Opposite:

p-value:1e-48
log p-value:-1.117e+02
Information Content per bp:1.738
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif3.58%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets88.2 +/- 55.5bp
Average Position of motif in Background87.8 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAATWTAATG---
TATAATTATAATATTC

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAATWTAATG---
GCTAATTATAATTATC

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AAATWTAATG---
NNTAATTATAATNANN

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AAATWTAATG-----
ANTAATTTTATGGCCGN

MA0151.1_ARID3A/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAATWTAATG
---TTTAAT-

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AAATWTAATG-
---GKTAATGR

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAATWTAATG------
NNAATTAATGACCNNN

MA0468.1_DUX4/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAATWTAATG-
TAATTTAATCA

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAATWTAATG------
NANANTTAATCCCNNNN

PH0152.1_Pou6f1_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAATWTAATG-------
AAACATAATGAGGTTGC