Information for motif25


Reverse Opposite:

p-value:1e-25
log p-value:-5.807e+01
Information Content per bp:1.722
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets118.1 +/- 49.7bp
Average Position of motif in Background91.6 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTGTTAAC----
ANNNCTAGTTAACNGNN

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGCTTGTTAAC---
GAAAACTAGTTAACATC

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGGCTTGTTAAC---
---CNTGTTTACATA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGGCTTGTTAAC--
--NYYTGTTTACHN

MA0031.1_FOXD1/Jaspar

Match Rank:5
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AGGCTTGTTAAC
----ATGTTTAC

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGGCTTGTTAAC------
-TGATTGTTAACAGTTGG

PB0017.1_Foxj3_1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGCTTGTTAAC-----
NNNTTTGTTTACNTTNN

MA0084.1_SRY/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGGCTTGTTAAC
---ATTGTTTAN

MA0593.1_FOXP2/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGGCTTGTTAAC--
---TNTGTTTACTT

PB0081.1_Tcf1_1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGCTTGTTAAC-----
NNNTTAGTTAACTNANN