Information for motif27


Reverse Opposite:

p-value:1e-24
log p-value:-5.551e+01
Information Content per bp:1.657
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets98.9 +/- 54.1bp
Average Position of motif in Background99.9 +/- 37.6bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:ATCTAAGCCC-
---TAATCCCN

MA0467.1_Crx/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ATCTAAGCCC---
--CTAATCCTCTT

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATCTAAGCCC----
NANANTTAATCCCNNNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATCTAAGCCC
-GCTAATCC-

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATCTAAGCCC---
GNNAGCTAATCCCCCN

PH0125.1_Obox5_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATCTAAGCCC----
GATAATTAATCCCTCTT

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATCTAAGCCC-----
NTTGTTAATCCCTCTNN

PH0122.1_Obox2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATCTAAGCCC-----
ATAGTTAATCCCCCTCA

MA0483.1_Gfi1b/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATCTAAGCCC
AAATCACAGCA-

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATCTAAGCCC
AAATCACTGC--