Information for motif30


Reverse Opposite:

p-value:1e-23
log p-value:-5.521e+01
Information Content per bp:1.666
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets93.4 +/- 53.6bp
Average Position of motif in Background106.4 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGATTATCAGAC---
AGATGKDGAGATAAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:AGATTATCAGAC----
------CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AGATTATCAGAC--
------CCAGACAG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AGATTATCAGAC--
------BCAGACWA

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGATTATCAGAC------
-CAAATCCAGACATCACA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGATTATCAGAC-
---ATGCCAGACN

PB0174.1_Sox30_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGATTATCAGAC--
TAAGATTATAATACGG

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGATTATCAGAC
GGATTAGC----

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AGATTATCAGAC--
--TTTCTNAGAAAN

MA0035.3_Gata1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGATTATCAGAC
ANAGATAAGAA---