Information for motif33


Reverse Opposite:

p-value:1e-21
log p-value:-5.047e+01
Information Content per bp:1.641
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets103.2 +/- 54.4bp
Average Position of motif in Background49.5 +/- 37.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTASADTYTW
NNCNNAACAATTNT

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTASADTYTW---
TNCNNAACAATTTTTNC

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TTASADTYTW-
TATAATTATAATATTC

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TTASADTYTW-
NCGTATTATAATCNTA

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TTASADTYTW-
TTTAATTATAATTAAG

PB0064.1_Sox14_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TTASADTYTW-
GCTAATTATAATTATC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTASADTYTW---
TTAATGTTTAACC

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTASADTYTW
NAACAAT---

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTASADTYTW------
TTCAATTGTTCTAAAA

MA0084.1_SRY/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TTASADTYTW
GTAAACAAT---