Information for motif36


Reverse Opposite:

p-value:1e-20
log p-value:-4.637e+01
Information Content per bp:1.742
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets96.9 +/- 52.4bp
Average Position of motif in Background20.4 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AATGGCCAACCA
ACTAGCCAATCA

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCCAACCA
GTTAATGGCC-----

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATGGCCAACCA--
--GGACCACCCACG

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AATGGCCAACCA
GGCAAAAGTCCAATAA

MA0161.1_NFIC/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AATGGCCAACCA
---TGCCAA---

MA0502.1_NFYB/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATGGCCAACCA-
AAATGGACCAATCAG

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AATGGCCAACCA-
---AGCCAATCGG

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AATGGCCAACCA
ANGNAAAGGTCA----

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AATGGCCAACCA
TCTCAAAGGTCACGAG

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AATGGCCAACCA
TCTCAAAGGTCACCTG