Information for motif42


Reverse Opposite:

p-value:1e-17
log p-value:-4.069e+01
Information Content per bp:1.614
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets90.5 +/- 50.8bp
Average Position of motif in Background122.9 +/- 12.0bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGACCAGCGGCA-
NTGCCCANNGGTNA

MA0003.2_TFAP2A/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGACCAGCGGCA---
TGCCCTGAGGCANTN

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGACCAGCGGCA-
CCGCCCAAGGGCAG

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGACCAGCGGCA
NNNNTGACCCGGCGCG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGACCAGCGGCA
TGACCT------

MA0522.1_Tcf3/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGACCAGCGGCA-
--CACAGCTGCAG

MA0524.1_TFAP2C/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGACCAGCGGCA---
TGCCCTGGGGCNANN

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGACCAGCGGCA----
CTCAGCAGCTGCTACTG

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGACCAGCGGCA
-CAGCAGCTGN-

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGACCAGCGGCA
ATGCCCTGAGGC-