Information for motif43


Reverse Opposite:

p-value:1e-16
log p-value:-3.854e+01
Information Content per bp:1.752
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets90.0 +/- 53.6bp
Average Position of motif in Background77.6 +/- 38.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GCTGTRTM
GCTGTG--

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GCTGTRTM
NGCTN----

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTRTM----
AGGACGCTGTAAAGGGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTRTM----
AAGACGCTGTAAAGCGA

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------GCTGTRTM-
NNTCCTGCTGTGNNN

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCTGTRTM
CAGCTGTT--

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTRTM
BAACAGCTGT---

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGTRTM
CAGCAGCTGN---

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTRTM
NAHCAGCTGD---

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------GCTGTRTM-
TNTCCTGCTGTGNNG