Information for motif45


Reverse Opposite:

p-value:1e-15
log p-value:-3.615e+01
Information Content per bp:1.659
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets104.0 +/- 59.9bp
Average Position of motif in Background121.3 +/- 36.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E-box(HLH)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCAGGTAACC--
TCACGTGACCGG

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TCAGGTAACC
GKVTCADRTTWC-

MA0526.1_USF2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCAGGTAACC
GTCATGTGACC

MA0093.2_USF1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCAGGTAACC
GCCACGTGACC

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGTAACC----
NTTTTAGTTAACNNAGN

MA0025.1_NFIL3/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCAGGTAACC-
TTATGTAACAT

PB0081.1_Tcf1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGTAACC----
NNNTTAGTTAACTNANN

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCAGGTAACC--
-CAGGTAAGTAT

MA0043.1_HLF/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCAGGTAACC
NATTACGTAACC

MA0160.1_NR4A2/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCAGGTAACC
-AAGGTCAC-