Information for motif5


Reverse Opposite:

p-value:1e-42
log p-value:-9.710e+01
Information Content per bp:1.732
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif2.63%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets104.7 +/- 53.3bp
Average Position of motif in Background95.6 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----ACTGATGGAGAC
NNNNNATTGATGNGTGN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACTGATGGAGAC
AACAGATGGC---

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ACTGATGGAGAC-
---AATGGAAAAT

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ACTGATGGAGAC
-ATGATGCAAT-

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACTGATGGAGAC
-MTGATGCAAT-

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ACTGATGGAGAC-
-ATGATKGATGRC

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACTGATGGAGAC----
-TTGACCGAGAATTCC

POL002.1_INR/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ACTGATGGAGAC
NNNANTGA-------

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ACTGATGGAGAC-
-NTGATTGACAGN

MA0070.1_PBX1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACTGATGGAGAC
TTTGATTGATGN