Information for motif6


Reverse Opposite:

p-value:1e-40
log p-value:-9.370e+01
Information Content per bp:1.732
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets92.8 +/- 55.8bp
Average Position of motif in Background69.2 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0004.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AACAACTTACCA--
CATAACCACTTAACAAC

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AACAACTTACCA-
--NNACTTACCTN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AACAACTTACCA--
CTTAACCACTTAAGGAT

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AACAACTTACCA--
TAAGCCACTTAACATT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACAACTTACCA
AAGCACTTAA--

PB0066.1_Sox17_1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AACAACTTACCA
ATAAACAATTAAACA

MA0027.1_En1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AACAACTTACCA
GANCACTACTT----

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AACAACTTACCA
NNNNNGAACAATTGANN-

PB0165.1_Sox11_2/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----AACAACTTACCA
NNCNNAACAATTNT---

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AACAACTTACCA
CAAACAACAACACCT--