Information for motif18


Reverse Opposite:

p-value:1e-19
log p-value:-4.490e+01
Information Content per bp:1.656
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets104.9 +/- 54.2bp
Average Position of motif in Background103.1 +/- 40.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ARCACTTCDA
AAGCACTTAA-

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ARCACTTCDA
RSCACTYRAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ARCACTTCDA
AASCACTCAA-

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ARCACTTCDA
---GCTTCC-

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ARCACTTCDA----
ATAACCACTTGAAAATT

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ARCACTTCDA--
--CACTTCCTCT

MA0122.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ARCACTTCDA
NCCACTTAN-

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ARCACTTCDA---
CATAACCACTTAACAAC

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ARCACTTCDA--
--CACTTCCTGT

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------ARCACTTCDA-
NNNNTGAGCACTGTNNG