Information for motif19


Reverse Opposite:

p-value:1e-19
log p-value:-4.490e+01
Information Content per bp:1.513
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets73.2 +/- 47.0bp
Average Position of motif in Background101.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CTCCDGGCAGTC
-TNNGGGCAG--

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTCCDGGCAGTC
--CTTGGCAA--

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTCCDGGCAGTC
-AVCAGGAAGT-

MA0156.1_FEV/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTCCDGGCAGTC
---CAGGAAAT-

MA0598.1_EHF/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTCCDGGCAGTC
---CAGGAAGG-

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTCCDGGCAGTC
-ACVAGGAAGT-

MA0003.2_TFAP2A/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTCCDGGCAGTC
CATTGCCTCAGGGCA---

MA0100.2_Myb/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTCCDGGCAGTC--
----TGGCAGTTGN

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTCCDGGCAGTC
NNNCTTTCCAGGAAA--

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTCCDGGCAGTC
TTCCNGGAAG--