Information for motif3


Reverse Opposite:

p-value:1e-26
log p-value:-6.013e+01
Information Content per bp:1.450
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets69.1 +/- 45.9bp
Average Position of motif in Background59.1 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----RGGSTCCAKT--
CTCCAGGGGTCAATTGA

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----RGGSTCCAKT--
NTNNNGGGGTCANGNNN

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----RGGSTCCAKT-
AGAGCGGGGTCAAGTA

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----RGGSTCCAKT--
GGCGAGGGGTCAAGGGC

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------RGGSTCCAKT-
NTNNNAGGAGTCTCNTN

PB0025.1_Glis2_1/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------RGGSTCCAKT
NTNTGGGGGGTCNNNA

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----RGGSTCCAKT--
TNNNNGGTGTCATNTNT

PB0156.1_Plagl1_2/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----RGGSTCCAKT--
GCTGGGGGGTACCCCTT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----RGGSTCCAKT-
CGCGCCGGGTCACGTA

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.48
Offset:-7
Orientation:reverse strand
Alignment:-------RGGSTCCAKT
NNNATTGGGGGTNTCCT