Information for motif30


Reverse Opposite:

p-value:1e-15
log p-value:-3.544e+01
Information Content per bp:1.830
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.6 +/- 53.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0011.1_HMG_class/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GCAACAAACC
--AACAAT--

POL007.1_BREd/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GCAACAAACC
--NANANAC-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCAACAAACC
RNAACAATGG

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCAACAAACC
ATGTCACAACAACAC

MA0511.1_RUNX2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCAACAAACC--
CAAACCACAAACCCC

MA0087.1_Sox5/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCAACAAACC
-NAACAAT--

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAACAAACC
GTAAACAAT--

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCAACAAACC----
AGAAGAACAAAGGACTA

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAACAAACC-
AAAAATAACAAACGG

MA0133.1_BRCA1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCAACAAACC
---ACAACAC