Information for motif40


Reverse Opposite:

p-value:1e-12
log p-value:-2.978e+01
Information Content per bp:1.797
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.30%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets82.3 +/- 54.8bp
Average Position of motif in Background125.1 +/- 44.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGACCGGC
CGGAGC---

PB0202.1_Zfp410_2/Jaspar

Match Rank:2
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGACCGGC----
NNTNNGGGGCGGNGNGN

PB0110.1_Bcl6b_2/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGACCGGC---
NNTNAGGGGCGGNNNN

MA0599.1_KLF5/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGACCGGC
GGGGNGGGGC

PB0167.1_Sox13_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGACCGGC----
GTATTGGGTGGGTAATT

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGACCGGC
DGGGYGKGGC

PB0107.1_Ascl2_2/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGACCGGC----
NATNGGGNGGGGANAN

MA0039.2_Klf4/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGACCGGC
TGGGTGGGGC

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGACCGGC--
GGTCCCGCCC

MA0056.1_MZF1_1-4/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGACCGGC
TGGGGA-----