Information for motif44


Reverse Opposite:

p-value:1e-11
log p-value:-2.748e+01
Information Content per bp:1.858
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets101.2 +/- 52.5bp
Average Position of motif in Background68.1 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0158.1_HOXA5/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AAKTAGCG
AATTAGTG

PH0032.1_Evx2/Jaspar

Match Rank:2
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------AAKTAGCG---
ANCGCTAATTAGCGGTN

PH0098.1_Lhx8/Jaspar

Match Rank:3
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------AAKTAGCG---
ACCCCTAATTAGCGGTG

PH0097.1_Lhx6_2/Jaspar

Match Rank:4
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------AAKTAGCG---
TCCACTAATTAGCGGTT

MA0132.1_Pdx1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AAKTAGCG
AATTAG--

PH0034.1_Gbx2/Jaspar

Match Rank:6
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------AAKTAGCG---
AGCGCTAATTAGCGATT

PH0039.1_Mnx1/Jaspar

Match Rank:7
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----AAKTAGCG---
GTACTAATTAGTGGCG

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AAKTAGCG
TAATTAGN-

PH0155.1_Prrx2/Jaspar

Match Rank:9
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------AAKTAGCG---
AAAGCTAATTAGCGAAA

PH0109.1_Nkx1-1/Jaspar

Match Rank:10
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------AAKTAGCG---
TGCGCTAATTAGTGGGA