Information for motif47


Reverse Opposite:

p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.818
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets82.9 +/- 58.3bp
Average Position of motif in Background39.4 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CGCGTGTG-----
NNGCGTGTGTGCNGCN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCGTGTG
TGCGTG--

MA0058.2_MAX/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CGCGTGTG---
-CCATGTGCTT

MA0147.2_Myc/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGCGTGTG---
-CCATGTGCTT

MA0506.1_NRF1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGCGTGTG--
GCGCCTGCGCA

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGCGTGTG-----
-NNHTGTGGTTWN

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGCGTGTG------
GGGCCGTGTGCAAAAA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGCGTGTG-
TTGCGTGCVA

MA0002.2_RUNX1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGCGTGTG----
-GTCTGTGGTTT

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGCGTGTG---
NTGGGTGTGGCC