Information for motif50


Reverse Opposite:

p-value:1e-10
log p-value:-2.337e+01
Information Content per bp:1.530
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets95.9 +/- 56.1bp
Average Position of motif in Background135.6 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCCCACGGTG
HTTTCCCASG---

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCCCACGGTG
YCCGCCCACGCN-

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCCCACGGTG
NYTTCCCGCC---

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCCCACGGTG--
ATTTCCCAGVAKSCY

PB0114.1_Egr1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCCCACGGTG--
NNAGTCCCACTCNNNN

MA0116.1_Zfp423/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCCCACGGTG--
GGCACCCAGGGGTGC

MA0088.1_znf143/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TCCCACGGTG------
GATTTCCCATAATGCCTTGC

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCCCACGGTG----
CCCCCCCGGGGGGGT

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCCCACGGTG---
NNTCCTGCTGTGNNN

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCCCACGGTG----
CCCCCCCGGGGGGGT