Information for motif51


Reverse Opposite:

p-value:1e-9
log p-value:-2.131e+01
Information Content per bp:1.952
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets86.9 +/- 57.9bp
Average Position of motif in Background89.4 +/- 49.5bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TCATAGTT-
CCATTGTTC

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TCATAGTT----
ANNTCCATTGTTCNNN

MA0087.1_Sox5/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TCATAGTT-
--ATTGTTA

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCATAGTT-
NCCATTGTTC

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCATAGTT-----
TACCCTAGTTACCGA

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCATAGTT------
TAATTGTTCTAAAC

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCATAGTT--
CCATTGTTTT

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCATAGTT------
TTCAATTGTTCTAAAA

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCATAGTT-----
NNNTCCTTTGTTCTNNN

PB0176.1_Sox5_2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCATAGTT-----
TATCATAATTAAGGA