Information for motif52


Reverse Opposite:

p-value:1e-9
log p-value:-2.101e+01
Information Content per bp:1.688
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif3.99%
Number of Background Sequences with motif20.9
Percentage of Background Sequences with motif1.45%
Average Position of motif in Targets106.7 +/- 54.0bp
Average Position of motif in Background71.4 +/- 50.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0131.1_HINFP/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCATGTCC--
TAACGTCCGC

MA0067.1_Pax2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCATGTCC
AGTCACGC--

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCATGTCC
GTCATN---

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCATGTCC------
GGGTGTGCCCAAAAGG

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TCATGTCC-
---TGACCT

PH0073.1_Hoxc9/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TCATGTCC---
NNAATTAATGACCNNN

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCATGTCC------
ACATGCCCGGGCAT

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCATGTCC
GCACGTNC

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TCATGTCC---
NAATTTTATTACCTNN

MA0156.1_FEV/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCATGTCC--
--ATTTCCTG