Information for motif55


Reverse Opposite:

p-value:1e-6
log p-value:-1.405e+01
Information Content per bp:1.530
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets131.5 +/- 33.4bp
Average Position of motif in Background87.2 +/- 35.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTAACCTG-----
GANGTTAACTAGTTTNN

PB0081.1_Tcf1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------TTAACCTG---
ACTTAGTTAACTAAAAA

MA0103.2_ZEB1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAACCTG
CCTCACCTG

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTAACCTG--
NNCACCTGNN

MA0046.1_HNF1A/Jaspar

Match Rank:5
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------TTAACCTG
GNTAATNATTAACC--

PB0109.1_Bbx_2/Jaspar

Match Rank:6
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------TTAACCTG--
NNNNCTGTTAACNNTNN

PH0168.1_Hnf1b/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TTAACCTG----
AGCTGTTAACTAGCCGT

PH0167.1_Tcf1/Jaspar

Match Rank:8
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------TTAACCTG--
NTTTTAGTTAACNNAGN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTAACCTG
-TGACCT-

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTAACCTG
NNACTTACCTN